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Publications depuis 2000

[1]   Oguey C. Deformations of periodic minimal surfaces. In Sadoc, J F and Rivier, N, ed., Foams and Emulsions, NATO E 354. Kluwer (1999). pdf

[2]   Hyde S., Oguey C. From 2D hyperbolic forests to 3D Euclidean entangled thickets. Eur. Phys. J. B 16(4) :613–630 (2000). pdf

[3]   Oguey C., Rivier N. Topological fluctuations and correlations in cellular patterns (analysis of a simple model). In Zitha, P and Banhart, J and Verbist, G, ed., Proc. Eurofoam 2000, . Verlag MIT (2000).

[4]   Oguey C., Rivier N. Roughness and scaling in cellular patterns : analysis of a simple model. J. Phys. A : Math. Gen. 34(32) :6225–6238 (2001). pdf

[5]   Mancini M., Oguey C. Star-triangle equivalence in two-dimensional soap froths. Phil. Mag. Let. 83(10) :643–649 (2003). pdf

[6]   Oguey C., Rivier N., Aste T. Stratifications of cellular patterns : hysteresis and convergence. Eur. Phys. J. B 33(4) :447–455 (2003). pdf

[7]   Djuranovic D., Oguey C., Hartmann B. The role of DNA structure and dynamics in the recognition of bovine papillomaviruis E2 protein target sequences. J. Mol. Biol. 339(4) :785–796 (2004). pdf

[8]   Mancini M., Oguey C. Equilibrium conditions and symmetries for foams in contact with solid surfaces. Col. Surf. A : Physicochem. Eng. Aspects 263(1-3) :33–38 (2005). online doi :10.1016/j.colsurfa.2005.01.022   pdf

[9]   Mancini M., Oguey C. Foams in contact with solid boundaries : Equilibrium conditions and conformal invariance. Eur. Phys. J. E 17(2) :119–128 (2005). online doi :10.1140/epje/i2004-10133-x   pdf

[10]   Rivier N., Miri M., Oguey C. Plasticity and topological defects in cellular structures : Extra matter, folds and crab moulting. Col. Surf. A : Physicochem. Eng. Aspects 263(1-3) :39–45 (2005). online doi :10.1016/j.colsurfa.2005.01.027   pdf

[11]   Mancini M., Oguey C. Decorated vertices with 3-edged cells in 2D foams : exact solutions and properties. Eur. Phys. J. E 22(2) :181–192 (2007). pdf

[12]   Miri M.F., Oguey C. Topological correlations and asymptotic freedom in cellular aggregates. Col. Surf. A : Physicochem. Eng. Aspects 309(1-3) :107–111 (2007). online doi :10.1016/j.colsurfa.2007.01.013   pdf

[13]   Heddi B., Foloppe N., Oguey C., Hartmann B. Importance of accurate DNA structures in solution : The Jun-Fos model. J. Mol. Biol. 382(4) :956–970 (2008). pdf

[14]   Hyde S.T., de Campo L., Oguey C. Tricontinuous mesophases of balanced three-arm ‘star polyphiles’. Soft Matter 5(14) :2782–2794 (2009). online doi :10.1039/B822814K   online   pdf

[15]   Esque J., Oguey C., de Brevern A.G. A novel evaluation of residue and protein volumes by means of laguerre tessellation. J. Chem. Inf. Model. 50(5) :947–60 (2010). pdf

[16]   Heddi B., Oguey C., Lavelle C., Foloppe N., Hartmann B. Intrinsic flexibility of B-DNA : the experimental TRX scale. Nucl. Acid Res. 38(3) :1034–1047 (2010). online doi :10.1093/nar/gkp962   pdf

[17]   Oguey C., Foloppe N., Hartmann B. Understanding the sequence-dependence of DNA groove dimensions : Implications for DNA interactions. PLoS ONE 5(12) :e15931 (2010). pdf

[18]   Esque J., Oguey C., de Brevern A. Comparative analysis of threshold and tessellation methods for determining protein contacts. J. Chem. Inf. Model. 51(2) :493–507 (2011). pdf

[19]   Oguey C. Long range topological correlations in cellular patterns. Col. Surf. A : Physicochem. Eng. Aspects 382(1-3) :32 – 35 (2011). pdf

[20]   Trambly de Laissardière G., Oguey C., Mayou D. Breakdown of semi-classical conduction theory in approximants of the octagonal tiling. Phil. Mag. 91(19-21) :2778–2786 (2011). pdf

[21]   Grassia P., Embley B., Oguey C. A Princen hexagonal foam out of physicochemical equilibrium. J. Rheol. 56(3) :501–526 (2012). pdf

[22]   Grassia P., Oguey C., Satomi R. Relaxation of the topological T1 process in a two-dimensional foam. Eur. Phys. J. E 35 :1–12 (2012). pdf

[23]   Esque J., Léonard S., de Brevern A.G., Oguey C. VLDP web server : a powerful geometric tool for analysing protein structures in their environment. Nucl. Acid Res. 41(W1) :W373–W378 (2013). online doi :10.1093/nar/gkt509

[24]   Satomi R., Grassia P., Oguey C. Modelling relaxation following T1 transformations of foams incorporating surfactant mass transfer by the Marangoni effect. Col. Surf. A : Physicochem. Eng. Aspects 438 :77–84 (2013). pdf

[25]   Ben Imeddourene A., Elbahnsi A., Guéroult M., Oguey C., Foloppe N., Hartmann B. Simulations meet experiment to reveal new insights into DNA intrinsic mechanics. PLoS Comput Biol 11(12) :e1004631 (2015). online doi :10.1371/journal.pcbi.1004631

[26]   Elbahnsi A., Mauffret O., Perahia D., Hartmann B., Oguey C. 25 New insights on nucleic acids – protein interfaces revealed by VLDM, a geometrical approach. J. Biomol. Struct. Dyn. 33(sup1) :14–15 (2015). online doi :10.1080/07391102.2015.1032565

[27]   Ben Imeddourene A., Xu X., Zargarian L., Oguey C., Foloppe N., Mauffret O., Hartmann B. The intrinsic mechanics of B-DNA in solution characterized by NMR. Nucl. Acid Res. 44(7) :3432–3447 (2016).   online doi :10.1093/nar/gkw084

[28]   Trambly de Laissardière G., Oguey C., Mayou D. Sub-diffusive electronic states in octagonal tiling. J. of Physics : Conf. Ser. 809(1) :012020 (2017). online doi :10.1088/1742-6596/809/1/012020   link

[29]   Elbahnsi A., Retureau R., Baaden M., Hartmann B., Oguey C. Holding the nucleosome together : A quantitative description of the DNA–histone interface in solution. J. Chem. Theory Comput. 14(2) :1045–1058 (2018). online doi :10.1021/acs.jctc.7b00936.

[30]   Esque J., Sansom M., Baaden M., Oguey C. Analyzing protein topology based on Laguerre tessellation of a pore-traversing water network. Sci Rep 8(13540) (2018). online doi :10.1038/s41598-018-31422-5.

[31]   Retureau R., Oguey C., Mauffret O., Hartmann B. Structural explorations of NCp7-nucleic acid complexes give keys to decipher the binding process. J. Mol. Biol. (in press) (2019). online doi :10.1016/j.jmb.2019.03.002.

[32]   Hyde S.T., Oguey C. Self-assembly of 3-arm mikto copolymers : on periodic 3-colourings of space. (en rédaction).